DD-INR: Dynamics-Driven Implicit Neural Representation for Accelerated Whole-Brain Functional MRI Reconstruction
2026-06-09 Qiaoxin Li, Caini Pan, Pierre-Antoine Comby, et al. Lecture Notes in Computer Science

Accelerated acquisition of fMRI enables enhanced detection of neurovascular (BOLD) activity in the brain, but image reconstruction becomes challenging with high k-space undersampling: Task-evoked BOLD signals are small in magnitude, which traditional anatomical MRI reconstruction methods fail to recover, as they favor…

Weakly Convex Ridge Regularization for 3D Non-Cartesian MRI Reconstruction
2026-03-28 German Shâma Wache, Chaithya Giliyar Radhakrishna, Asma Tanabene, Sebastian Neumayer arXiv (Cornell University)

While highly accelerated non-Cartesian acquisition protocols significantly reduce scan time, they often entail long reconstruction delays. Deep learning based reconstruction methods can alleviate this, but often lack stability and robustness to distribution shifts.

Benchmarking 3D multi-coil NC-PDNet MRI reconstruction
2025-09-16 Asma Tanabene, Chaithya Giliyar Radhakrishna, Aurélien Massire, et al. 2025 IEEE 22nd International Symposium on Biomedical Imaging (ISBI)

Motivation: Deep Neural Networks (DNNs) show promise in reconstructing undersampled MRI data but face challenges with non-Cartesian 3D multi-coil acquisitions due to high memory demands and training complexity. Goal(s): To address the research gap in validating DNNs performances for non-Cartesian data in 3D multi-coil…

Jointly learning non-cartesian k-space trajectories and reconstruction networks for 2D and 3D MR imaging through projection
2023-01-24 Chaithya Giliyar Radhakrishna, Philippe Ciuciu Bioengineering

Compressed sensing in magnetic resonance imaging essentially involves the optimization of (1) the sampling pattern in k-space under MR hardware constraints and (2) image reconstruction from undersampled k-space data. Recently, deep learning methods have allowed the community to address both problems simultaneously,…

NC-PDNet: A density-compensated unrolled network for 2D and 3D non-Cartesian MRI reconstruction
2022-01-18 Zaccharie Ramzi, Chaithya Giliyar Radhakrishna, Jean-Luc Starck, Philippe Ciuciu IEEE Transactions on Medical Imaging

Deep Learning has become a very promising avenue for magnetic resonance image (MRI) reconstruction. In this work, we explore the potential of unrolled networks for non-Cartesian acquisition settings.

Hybrid learning of non-cartesian k-space trajectory and MR image reconstruction networks
2021-10-25 Chaithya Giliyar Radhakrishna, Zaccharie Ramzi, Philippe Ciuciu 2022 IEEE 19th International Symposium on Biomedical Imaging (ISBI)

Compressed sensing (CS) in Magnetic resonance Imaging (MRI) essentially involves the optimization of 1) the sampling pattern in k-space under MR hardware constraints and 2) image reconstruction from the undersampled k-space data. Recently, deep learning methods have allowed the community to address both problems…

Learning the sampling density in 2D SPARKLING MRI acquisition for optimized image reconstruction
2021-08-23 Chaithya Giliyar Radhakrishna, Zaccharie Ramzi, Philippe Ciuciu 2021 29th European Signal Processing Conference (EUSIPCO)

The SPARKLING algorithm was originally developed for accelerated 2D magnetic resonance imaging (MRI) in the compressed sensing (CS) context. It yields non-Cartesian sampling trajectories that jointly fulfill a target sampling density while each individual trajectory complies with MR hardware constraints.